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PROTEINS: Structure, Function, and Bioinformatics | Protein Science Journal | Wiley Online Journal
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Proteins: Structure, Function, and Bioinformatics Journal Articles Actions Proteins: Structure, Function, and Bioinformatics: Volume 94, Issue 1 Special issue: CASP16: Critical Assessment of methods for Structure Prediction, 16th round Pages: C1-C4, 1-459 January 2026 Guest Editor(s): John Moult Andriy Kryshtafovych Previous Issue|Next Issue GO TO SECTION Export Citation(s) COVER IMAGE Free Access Cover Image, Volume 94, Issue 1 Andriy Kryshtafovych, Torsten Schwede, Maya Topf, Krzysztof Fidelis, John Moult Page: C1 First Published: 29 December 2025
Obverse Cover 1: The cover image is based on the article Progress and bottlenecks for deep learning in computational structure biology: CASP round XVI by Andriy Kryshtafovych et al., https://doi.org/10.1002/prot.70076
Abstract PDF Request permissions ADDITIONAL COVER Free Access Cover Image, Volume 94, Issue 1 Andriy Kryshtafovych, Maciej Milostan, Marc F. Lensink, Sameer Velankar, Alexandre M. J. J. Bonvin, John Moult, Krzysztof Fidelis Page: C2 First Published: 29 December 2025
Obverse Cover 2: The cover image is based on the article Updates to the CASP infrastructure in 2024 by Andriy Kryshtafovych et al., https://doi.org/10.1002/prot.70042.
Abstract PDF Request permissions Free Access Cover Image, Volume 94, Issue 1 Mahta Mehdiabadi, Alessio Del Conte, Maria Victoria Nugnes, Maria Cristina Aspromonte, Silvio C. E. Tosatto, Damiano Piovesan Page: C3 First Published: 29 December 2025
Reverse Cover 2: The cover image is based on the article Critical Assessment of Protein Intrinsic Disorder Round 3 - Predicting Disorder in the Era of Protein Language Models by Mahta Medihabadi et al., https://doi.org/10.1002/prot.70045.
Abstract PDF Request permissions Free Access Cover Image, Volume 94, Issue 1 Allen C. McBride, Feng Yu, Edward H. Cheng, Aulane Mpouli, Aimee C. Soe, Michal Hammel, Gaetano T. Montelione, Terrence G. Oas, Susan E. Tsutakawa, Bruce R. Donald Page: C4 First Published: 29 December 2025
Reverse Cover 1: The cover image is based on the article Predicting pose distribution of protein domains connected by flexible linkers is an unsolved problem by Bruce Donald et al., https://doi.org/10.1002/prot.70062.
Abstract PDF Request permissions ISSUE INFORMATION Free Access Issue Information - Table of Content Pages: 1-3 First Published: 29 December 2025 First Page PDF Request permissions RESEARCH ARTICLE Open Access Progress and Bottlenecks for Deep Learning in Computational Structure Biology: CASP Round XVI Andriy Kryshtafovych, Torsten Schwede, Maya Topf, Krzysztof Fidelis, John Moult Pages: 5-14 First Published: 03 November 2025 Abstract Full text PDF References Request permissions Open Access Updates to the CASP Infrastructure in 2024 Andriy Kryshtafovych, Maciej Milostan, Marc F. Lensink, Sameer Velankar, Alexandre M. J. J. Bonvin, John Moult, Krzysztof Fidelis Pages: 15-24 First Published: 01 September 2025 Abstract Full text PDF References Request permissions Open Access Protein Target Highlights in CASP16: Insights From the Structure Providers Leila T. Alexander, Océane M. Follonier, Andriy Kryshtafovych, Kim Abesamis, Sabrina Bibi-Triki, Henry G. Box, Cécile Breyton, Françoise Bringel, Loic Carrique, Alessio d'Acapito, Gang Dong, Rebecca DuBois, Deborah Fass, Juliana Martinez Fiesco, Daniel R. Fox, Jonathan M. Grimes, Rhys Grinter, Matthew Jenkins, Roman Kamyshinsky, Jeremy R. Keown, Gerald Lackner, Michael Lammers, Shiheng Liu, Andrew L. Lovering, Tomas Malinauskas, Benoît Masquida, Gottfried J. Palm, Christian Siebold, Tiantian Su, Ping Zhang, Z. Hong Zhou, Krzysztof Fidelis, Maya Topf, John Moult, Torsten Schwede Pages: 25-50 First Published: 09 October 2025 Abstract Full text PDF References Request permissions Open Access Functional Relevance of CASP16 Nucleic Acid Predictions as Evaluated by Structure Providers Rachael C. Kretsch, Reinhard Albrecht, Ebbe S. Andersen, Hsuan-Ai Chen, Wah Chiu, Rhiju Das, Jeanine G. Gezelle, Marcus D. Hartmann, Claudia Höbartner, Yimin Hu, Shekhar Jadhav, Philip E. Johnson, Christopher P. Jones, Deepak Koirala, Emil L. Kristoffersen, Eric Largy, Anna Lewicka, Cameron D. Mackereth, Marco Marcia, Michela Nigro, Manju Ojha, Joseph A. Piccirilli, Phoebe A. Rice, Heewhan Shin, Anna-Lena Steckelberg, Zhaoming Su, Yoshita Srivastava, Liu Wang, Yuan Wu, Jiahao Xie, Nikolaj H. Zwergius, John Moult, Andriy Kryshtafovych Pages: 51-78 First Published: 04 September 2025 Abstract Full text PDF References Request permissions Free Access The CASP 16 Experimental Protein–Ligand Datasets Andreas Tosstorff, Markus G. Rudolph, Jörg Benz, Bernd Kuhn, Christian Kramer, May Sharpe, Chia-Ying Huang, Alexander Metz, Julien Hazemann, Daniel Ritz, Aengus Mac Sweeney, Michael K. Gilson Pages: 79-85 First Published: 03 October 2025 Abstract Full text PDF References Request permissions Open Access CASP16 Protein Monomer Structure Prediction Assessment Rongqing Yuan, Jing Zhang, Andriy Kryshtafovych, R. Dustin Schaeffer, Jian Zhou, Qian Cong, Nick V. Grishin Pages: 86-105 First Published: 17 August 2025 Abstract Full text PDF References Request permissions Open Access Assessment of Protein Complex Predictions in CASP16: Are We Making Progress? Jing Zhang, Rongqing Yuan, Andriy Kryshtafovych, Jimin Pei, Rachael C. Kretsch, R. Dustin Schaeffer, Jian Zhou, Rhiju Das, Nick V. Grishin, Qian Cong Pages: 106-130 First Published: 31 October 2025 Abstract Full text PDF References Request permissions Free Access Improving AlphaFold2- and AlphaFold3-Based Protein Complex Structure Prediction With MULTICOM4 in CASP16 Jian Liu, Pawan Neupane, Jianlin Cheng Pages: 131-141 First Published: 02 June 2025 Abstract Full text PDF References Request permissions Free Access Accurate Biomolecular Structure Prediction in CASP16 With Optimized Inputs to State-Of-The-Art Predictors Wenkai Wang, Yuxian Luo, Zhenling Peng, Jianyi Yang Pages: 142-153 First Published: 05 August 2025 Abstract Full text PDF References Request permissions Open Access AlphaFold3 at CASP16 Arne Elofsson Pages: 154-166 First Published: 25 August 2025 Abstract Full text PDF References Request permissions Open Access Structure Modeling Protocols for Protein Multimer and RNA in CASP16 With Enhanced MSAs, Model Ranking, and Deep Learning Yuki Kagaya, Tsukasa Nakamura, Jacob Verburgt, Anika Jain, Genki Terashi, Pranav Punuru, Emilia Tugolukova, Joon Hong Park, Anouka Saha, David Huang, Daisuke Kihara Pages: 167-182 First Published: 01 August 2025 Abstract Full text PDF References Request permissions Open Access Modeling Protein–Protein and Protein–Ligand Interactions by the ClusPro Team in CASP16 Ryota Ashizawa, Sergei Kotelnikov, Omeir Khan, Stan Xiaogang Li, Ernest Glukhov, Xin Cao, Maria Lazou, Ayse Bekar-Cesaretli, Derara Hailegeorgis, Veranika Averkava, Yimin Zhu, George Jones, Hao Yu, Dmytro Kalitin, Darya Stepanenko, Kushal Koirala, Taras Patsahan, Dmitri Beglov, Mark Lukin, Diane Joseph-McCarthy, Carlos Simmerling, Alexander Tropsha, Evangelos Coutsias, Ken A. Dill, Dzmitry Padhorny, Sandor Vajda, Dima Kozakov Pages: 183-191 First Published: 20 October 2025 Abstract Full text PDF References Request permissions Free Access Assessment of Nucleic Acid Structure Prediction in CASP16 Rachael C. Kretsch, Alissa M. Hummer, Shujun He, Rongqing Yuan, Jing Zhang, Thomas Karagianes, Qian Cong, Andriy Kryshtafovych, Rhiju Das Pages: 192-217 First Published: 30 October 2025 Abstract Full text PDF References Request permissions Open Access The RNA-Puzzles Assessments of RNA-Only Targets in CASP16 Eric Westhof, Hao Sun, Fan Bu, Zhichao Miao Pages: 218-229 First Published: 03 October 2025 Abstract Full text PDF References Request permissions Free Access Enhancing RNA 3D Structure Prediction: A Hybrid Approach Combining Expert Knowledge and Computational Tools in CASP16 Bowen Xiao, Yaohuang Shi, Lin Huang Pages: 230-238 First Published: 08 August 2025 Abstract Full text PDF References Request permissions 1 2 Sign up for email alerts
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