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PROTEINS: Structure, Function, and Bioinformatics | Protein Science Journal | Wiley Online Journal
URL: https://onlinelibrary.wiley.com/toc/10970134/2023/91/12
Saved: 2026-05-13T01:05:55.618Z
Proteins: Structure, Function, and Bioinformatics Journal Articles Actions Proteins: Structure, Function, and Bioinformatics: Volume 91, Issue 12 Special Issue:CASP15: Critical Assessment of methods for Structure Prediction, 15th round Pages: C1-C4, 1535-1951 December 2023 Guest Editor(s): John Moult Andriy Kryshtafovych Previous Issue|Next Issue GO TO SECTION Export Citation(s) ISSUE INFORMATION - COVER IMAGE Free Access Cover Image, Volume 91, Issue 12 Burcu Ozden, Andriy Kryshtafovych, Ezgi Karaca Page: C1 First Published: 23 November 2023
Front Cover: The cover image is based on the Research Article The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15 by Burcu Ozden et al., https://doi.org/10.1002/prot.26598.
Abstract PDF Request permissions Free Access Cover Image, Volume 91, Issue 12 Rhiju Das, Rachael C. Kretsch, Adam J. Simpkin, Thomas Mulvaney, Phillip Pham, Ramya Rangan, Fan Bu, Ronan M. Keegan, Maya Topf, Daniel J. Rigden, Zhichao Miao, Eric Westhof Page: C4 First Published: 23 November 2023
Reverse Cover: The cover image is based on the Research Article Assessment of three-dimensional RNA structure prediction in CASP15 by Rhiju Das and Rachael C. Kretsch et al., https://doi.org/10.1002/prot.26602.
Abstract PDF Request permissions TABLE OF CONTENT Free Access Issue Information - Table of Content Pages: 1535-1538 First Published: 23 November 2023 PDF Request permissions RESEARCH ARTICLES Open Access Critical assessment of methods of protein structure prediction (CASP)—Round XV Andriy Kryshtafovych, Torsten Schwede, Maya Topf, Krzysztof Fidelis, John Moult Pages: 1539-1549 First Published: 02 November 2023 Abstract Full text PDF References Request permissions Open Access New prediction categories in CASP15 Andriy Kryshtafovych, Maciej Antczak, Marta Szachniuk, Tomasz Zok, Rachael C. Kretsch, Ramya Rangan, Phillip Pham, Rhiju Das, Xavier Robin, Gabriel Studer, Janani Durairaj, Jerome Eberhardt, Aaron Sweeney, Maya Topf, Torsten Schwede, Krzysztof Fidelis, John Moult Pages: 1550-1557 First Published: 12 June 2023 Abstract Full text PDF References Request permissions To split or not to split: CASP15 targets and their processing into tertiary structure evaluation units Andriy Kryshtafovych, Daniel J. Rigden Pages: 1558-1570 First Published: 31 May 2023 Abstract Full text PDF References Request permissions Open Access Protein target highlights in CASP15: Analysis of models by structure providers Leila T. Alexander, Janani Durairaj, Andriy Kryshtafovych, Luciano A. Abriata, Yusupha Bayo, Gira Bhabha, Cécile Breyton, Simon G. Caulton, James Chen, Séraphine Degroux, Damian C. Ekiert, Benedikte S. Erlandsen, Lydia Freddolino, Dominic Gilzer, Chris Greening, Jonathan M. Grimes, Rhys Grinter, Manickam Gurusaran, Marcus D. Hartmann, Charlie J. Hitchman, Jeremy R. Keown, Ashleigh Kropp, Petri Kursula, Andrew L. Lovering, Bruno Lemaitre, Andrea Lia, Shiheng Liu, Maria Logotheti, Shuze Lu, Sigurbjörn Markússon, Mitchell D. Miller, George Minasov, Hartmut H. Niemann, Felipe Opazo, George N. Phillips Jr, Owen R. Davies, Samuel Rommelaere, Monica Rosas-Lemus, Pietro Roversi, Karla Satchell, Nathan Smith, Mark A. Wilson, Kuan-Lin Wu, Xian Xia, Han Xiao, Wenhua Zhang, Z. Hong Zhou, Krzysztof Fidelis, Maya Topf, John Moult, Torsten Schwede Pages: 1571-1599 First Published: 26 July 2023 Abstract Full text PDF References Request permissions Open Access RNA target highlights in CASP15: Evaluation of predicted models by structure providers Rachael C. Kretsch, Ebbe S. Andersen, Janusz M. Bujnicki, Wah Chiu, Rhiju Das, Bingnan Luo, Benoît Masquida, Ewan K. S. McRae, Griffin M. Schroeder, Zhaoming Su, Joseph E. Wedekind, Lily Xu, Kaiming Zhang, Ivan N. Zheludev, John Moult, Andriy Kryshtafovych Pages: 1600-1615 First Published: 19 July 2023 Abstract Full text PDF References Request permissions Open Access Tertiary structure assessment at CASP15 Adam J. Simpkin, Shahram Mesdaghi, Filomeno Sánchez Rodríguez, Luc Elliott, David L. Murphy, Andriy Kryshtafovych, Ronan M. Keegan, Daniel J. Rigden Pages: 1616-1635 First Published: 25 September 2023 Abstract Full text PDF References Request permissions Open Access The impact of AI-based modeling on the accuracy of protein assembly prediction: Insights from CASP15 Burcu Ozden, Andriy Kryshtafovych, Ezgi Karaca Pages: 1636-1657 First Published: 20 October 2023 Abstract Full text PDF References Request permissions Open Access Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment Marc F. Lensink, Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato, Charlotte van Noort, Joao M. C. Teixeira, Alexandre M. J. J. Bonvin, Ren Kong, Hang Shi, Xufeng Lu, Shan Chang, Jian Liu, Zhiye Guo, Xiao Chen, Alex Morehead, Raj S. Roy, Tianqi Wu, Nabin Giri, Farhan Quadir, Chen Chen, Jianlin Cheng, Carlos A. Del Carpio, Eichiro Ichiishi, Luis A. Rodriguez-Lumbreras, Juan Fernandez-Recio, Ameya Harmalkar, Lee-Shin Chu, Sam Canner, Rituparna Smanta, Jeffrey J. Gray, Hao Li, Peicong Lin, Jiahua He, Huanyu Tao, Sheng-You Huang, Jorge Roel-Touris, Brian Jimenez-Garcia, Charles W. Christoffer, Anika J. Jain, Yuki Kagaya, Harini Kannan, Tsukasa Nakamura, Genki Terashi, Jacob C. Verburgt, Yuanyuan Zhang, Zicong Zhang, Hayato Fujuta, Masakazu Sekijima, Daisuke Kihara, Omeir Khan, Sergei Kotelnikov, Usman Ghani, Dzmitry Padhorny, Dmitri Beglov, Sandor Vajda, Dima Kozakov, Surendra S. Negi, Tiziana Ricciardelli, Didier Barradas-Bautista, Zhen Cao, Mohit Chawla, Luigi Cavallo, Romina Oliva, Rui Yin, Melyssa Cheung, Johnathan D. Guest, Jessica Lee, Brian G. Pierce, Ben Shor, Tomer Cohen, Matan Halfon, Dina Schneidman-Duhovny, Shaowen Zhu, Rujie Yin, Yuanfei Sun, Yang Shen, Martyna Maszota-Zieleniak, Krzysztof K. Bojarski, Emilia A. Lubecka, Mateusz Marcisz, Annemarie Danielsson, Lukasz Dziadek, Margrethe Gaardlos, Artur Gieldon, Adam Liwo, Sergey A. Samsonov, Rafal Slusarz, Karolina Zieba, Adam K. Sieradzan, Cezary Czaplewski, Shinpei Kobayashi, Yuta Miyakawa, Yasuomi Kiyota, Mayuko Takeda-Shitaka, Kliment Olechnovic, Lukas Valancauskas, Justas Dapkunas, Ceslovas Venclovas, Bjorn Wallner, Lin Yang, Chengyu Hou, Xiaodong He, Shuai Guo, Shenda Jiang, Xiaoliang Ma, Rui Duan, Liming Qui, Xianjin Xu, Xiaoqin Zou, Sameer Velankar, Shoshana J. Wodak Pages: 1658-1683 First Published: 31 October 2023 Abstract Full text PDF References Request permissions Open Access Integrating deep learning, threading alignments, and a multi-MSA strategy for high-quality protein monomer and complex structure prediction in CASP15 Wei Zheng, Qiqige Wuyun, Lydia Freddolino, Yang Zhang Pages: 1684-1703 First Published: 31 August 2023 Abstract Full text PDF References Request permissions Improved protein structure prediction with trRosettaX2, AlphaFold2, and optimized MSAs in CASP15 Zhenling Peng, Wenkai Wang, Hong Wei, Xiaoge Li, Jianyi Yang Pages: 1704-1711 First Published: 10 August 2023 Abstract Full text PDF References Request permissions Improving protein structure prediction with extended sequence similarity searches and deep-learning-based refinement in CASP15 Toshiyuki Oda Pages: 1712-1723 First Published: 24 July 2023 Abstract Full text PDF References Request permissions Prediction of protein assemblies by structure sampling followed by interface-focused scoring Kliment Olechnovič, Lukas Valančauskas, Justas Dapkūnas, Česlovas Venclovas Pages: 1724-1733 First Published: 14 August 2023 Abstract Full text PDF References Request permissions Open Access Improved multimer prediction using massive sampling with AlphaFold in CASP15 Björn Wallner Pages: 1734-1746 First Published: 07 August 2023 Abstract Full text PDF References Request permissions Open Access Assessment of three-dimensional RNA structure prediction in CASP15 Rhiju Das, Rachael C. Kretsch, Adam J. Simpkin, Thomas Mulvaney, Phillip Pham, Ramya Rangan, Fan Bu, Ronan M. Keegan, Maya Topf, Daniel J. Rigden, Zhichao Miao, Eric Westhof Pages: 1747-1770 First Published: 24 October 2023 Abstract Full text PDF References Request permissions RNA tertiary structure modeling with BRiQ potential in CASP15 Ke Chen, Yaoqi Zhou, Sheng Wang, Peng Xiong Pages: 1771-1778 First Published: 28 August 2023 Abstract Full text PDF References Request permissions Advancing RNA 3D structure prediction: Exploring hierarchical and hybrid approaches in CASP15 Jun Li, Sicheng Zhang, Shi-Jie Chen Pages: 1779-1789 First Published: 24 August 2023 Abstract Full text PDF References Request permissions RNA tertiary structure prediction using RNAComposer in CASP15 Joanna Sarzynska, Mariusz Popenda, Maciej Antczak, Marta Szachniuk Pages: 1790-1799 First Published: 24 August 2023 Abstract Full text PDF References Request permissions 1 2 Sign up for email alerts
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