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Edits are public and licensed CC-BY-SA-4.0. # Pocketz A collection of saved articles and resources. ## Articles ### January 2026 #### Structural Biology & Protein Science - [Structural and functional characterization of human sweet taste receptor](2026-01-11_182653_nature_s41586-025-09302-6.md) - [EMProt improves structure determination from cryo-EM maps](2026-01-10_085303_nature_s41594-025-01723-1.md) - [Integrating diverse experimental information to assist protein complex structure prediction by GRASP](2026-01-10_085441_nature_s41592-025-02820-1.md) - [The molecular basis for acetylhistidine synthesis by HisAT/NAT16](2026-01-10_083638_nature_s41467-025-61145-x.md) - [A structural biology compatible file format for atomic force microscopy](2026-01-10_085031_nature_s41467-025-56760-7.md) - [A unique inhibitor conformation selectively targets the DNA polymerase PolC of Gram-positive priority pathogens](2026-01-10_085324_nature_s41467-025-65324-8.md) - [Molecular insights of acarbose metabolization catalyzed by acarbose-preferred glucosidase](2026-01-10_085606_nature_s41467-025-62855-y.md) - [Structural insights into kainate receptor desensitization](2026-01-10_120634_nature_s41467-025-65920-8.md) - [Conformational trajectory of the HIV-1 fusion peptide during CD4-induced envelope opening](2026-01-10_120819_nature_s41467-025-59721-2.md) - [Ensemble refinement of mismodeled cryo-EM RNA structures using all-atom simulations](2026-01-10_120837_nature_s41467-025-59769-0.md) - [Lipids modulate the dynamics of GPCR:β-arrestin interaction](2026-01-10_120908_nature_s41467-025-59842-8.md) - [Mechanism of cooperative strigolactone perception by the MAX2 ubiquitin ligase–receptor–substrate complex](2026-01-10_121942_nature_s41467-025-65205-0.md) - [Large scale investigation of GPCR molecular dynamics data uncovers allosteric sites and lateral gateways](2026-01-10_123745_nature_s41467-025-57034-y.md) - [Native globular ferritin nanopore sensor](2026-01-10_092450_nature_s41467-025-60322-2.md) - [De novo design of light-responsive protein–protein interactions enables reversible formation of protein assemblies](2026-01-11_181946_nature_s41557-025-01929-2.md) - [Persistent activation of TRPM4 triggers necrotic cell death characterized by sodium overload](2026-01-11_182135_nature_s41589-025-01841-3.md) - [Unfreezing structural biology for drug discovery](2026-01-11_181935_nature_s41589-025-02047-3.md) #### AI & Computational Drug Discovery - [Assessing the potential of deep learning for protein–ligand docking](2026-01-10_120933_nature_s42256-025-01160-1.md) - [Benchmarking AI-powered docking methods from the perspective of virtual screening](2026-01-11_181713_nature_s42256-025-00993-0.md) - [Deep-learning-based single-domain and multidomain protein structure prediction with D-I-TASSER](2026-01-10_120726_nature_s41587-025-02654-4.md) - [Efficient protein structure generation with sparse denoising models](2026-01-10_132038_nature_s42256-025-01100-z.md) - [Informed protein–ligand docking via geodesic guidance in translational, rotational and torsional spaces](2026-01-10_132144_nature_s42256-025-01091-x.md) - [Protein–peptide docking with a rational and accurate diffusion generative model](2026-01-11_181734_nature_s42256-025-01077-9.md) - [An interaction-derived graph learning framework for scoring protein–peptide complexes](2026-01-11_181912_nature_s42256-025-01136-1.md) - [Deep lead optimization enveloped in protein pocket and its application in designing potent and selective ligands targeting LTK protein](2026-01-11_182008_nature_s42256-025-00997-w.md) - [Multimodal out-of-distribution individual uncertainty quantification enhances binding affinity prediction for polypharmacology](2026-01-11_181755_nature_s42256-025-01151-2.md) - [Accurate single-domain scaffolding of three nonoverlapping protein epitopes using deep learning](2026-01-10_131923_nature_s41589-025-02083-z.md) - [SE(3)-equivariant ternary complex prediction towards target protein degradation](2026-01-10_122115_nature_s41467-025-61272-5.md) - [NuFold: end-to-end approach for RNA tertiary structure prediction with flexible nucleobase center representation](2026-01-10_123811_nature_s41467-025-56261-7.md) - [LassoPred: a tool to predict the 3D structure of lasso peptides](2026-01-10_090824_nature_s41467-025-60544-4.md) - [An experimental proxy of water displaceability for ligand discovery](2026-01-10_090741_nature_s41592-025-02724-0.md) - [A scalable reinforcement learning approach for screening large peptide libraries for bioactive peptide discovery](2026-01-10_120600_nature_s41467-025-66748-y.md) - [A Folding-Docking-Affinity framework for protein-ligand binding affinity prediction](2026-01-10_132239_nature_s42004-025-01506-1.md) - [FeatureDock for protein-ligand docking guided by physicochemical feature-based local environment learning using transformer](2026-01-10_132912_nature_s44386-025-00005-6.md) - [LABind: identifying protein binding ligand-aware sites via learning interactions between ligand and protein](2026-01-10_132944_nature_s41467-025-62899-0.md) - [Virtual library docking for cannabinoid-1 receptor agonists with reduced side effects](2026-01-10_133104_nature_s41467-025-57136-7.md) - [In silico docking yields small molecule negative allosteric modulators targeting the core of Frizzled 7](2026-01-10_133500_nature_s41467-025-67147-z.md) - [Rapid traversal of vast chemical space using machine learning-guided docking screens](2026-01-10_153713_nature_s43588-025-00777-x.md) - [MAI-TargetFisher: A proteome-wide drug target prediction method synergetically enhanced by artificial intelligence and physical modeling](2026-01-11_181844_nature_s41401-024-01444-z.md) - [The impact of library size and scale of testing on virtual screening](2026-01-11_182112_nature_s41589-024-01797-w.md) - [Interformer: an interaction-aware model for protein-ligand docking and affinity prediction (Author Correction)](2026-01-10_132223_nature_s41467-025-56973-w.md) - [Unbiased picture of the ligand docking process for the hevein protein–oligosaccharide complex](2026-01-10_132856_nature_s41598-025-87407-8.md) - [Ultra-large library screening with an evolutionary algorithm in Rosetta (REvoLd)](2026-01-11_182627_nature_s42004-025-01758-x.md) #### Molecular Docking & Drug Design Studies - [In-silico identification of novel Cis-aconitate decarboxylase inhibitors as potential anti-inflammatory agents](2026-01-10_133021_nature_s41598-025-26473-4.md) - [Computational investigation of natural compounds as inhibitors against macrolide-resistant protein](2026-01-10_133141_nature_s41598-025-97083-3.md) - [Design, biological evaluation, solvatochromic, DFT, and molecular docking studies of new metal complexes derived from a semicarbazone ligand](2026-01-10_133214_nature_s41598-025-26629-2.md) - [Exploring corrosion behavior, antimicrobial evaluation, molecular docking and DFT calculation of thiosemicarbazone ligand and its metal complexes](2026-01-10_133052_nature_s41598-025-98580-1.md) #### Personal - [doi.bio sness](2026-01-10_120724_snessdoibio_sness.md) ### December 2025 #### D&D Beyond - Phandelver and Below: The Shattered Obelisk - [Phandelver and Below: The Shattered Obelisk](2025-12-13_185414_dndbeyondcom_pbtso.md) - [Wave Echo Cave](2025-12-15_232638_dndbeyondcom_wave-echo-cave.md) - [Paths of Peril](2025-12-15_232658_dndbeyondcom_paths-of-peril.md) - [The Shattered Obelisk](2025-12-15_232716_dndbeyondcom_the-shattered-obelisk.md) - [Rifts in Reality](2025-12-15_232742_dndbeyondcom_rifts-in-reality.md) - [Beyond a Lightless Star](2025-12-15_232802_dndbeyondcom_beyond-a-lightless-star.md) - [Bestiary](2025-12-15_232823_dndbeyondcom_bestiary.md) - [Magic Items](2025-12-15_232835_dndbeyondcom_magic-items.md) #### D&D Beyond - Eberron: Rising from the Last War - [Eberron: Rising from the Last War](2025-12-15_233107_dndbeyondcom_erftlw.md) - [Welcome to Eberron](2025-12-15_233123_dndbeyondcom_welcome-to-eberron.md) - [Character Creation](2025-12-15_233255_dndbeyondcom_character-creation.md) - [Character Creation - Dragonmarks](2025-12-15_234346_dndbeyondcom_character-creation-dragonmarks.md) - [Character Creation - Class: Artificer](2025-12-15_234421_dndbeyondcom_character-creation-class-artificer.md) - [Character Creation - Group Patrons](2025-12-15_100931_dndbeyondcom_character-creation-group-patrons.md) - [Khorvaire Gazeteer](2025-12-15_101015_dndbeyondcom_khorvaire-gazeteer.md) - [Khorvaire Gazeteer - Distant Lands](2025-12-15_101030_dndbeyondcom_khorvaire-gazeteer-distant-lands.md) #### D&D Beyond - Sword Coast Adventurer's Guide - [Sword Coast Adventurer's Guide](2025-12-15_101117_dndbeyondcom_scag.md) - [Preface](2025-12-15_101129_dndbeyondcom_preface.md) - [Welcome to the Realms](2025-12-15_101142_dndbeyondcom_welcome-to-the-realms.md) #### D&D Beyond - The Griffon's Saddlebag - [The Griffon's Saddlebag: Book Two](2025-12-14_215648_dndbeyondcom_gsb2.md) - [Introduction](2025-12-14_215716_dndbeyondcom_introduction.md) #### D&D Beyond - Characters - [Nevets Runeshield's Character Sheet](2025-12-15_230924_dndbeyondcom_157244162.md) #### Research Papers - [MolBench: A Benchmark of AI Models for Molecular Property Prediction](2025-12-27_192454_researchgatenet_378185395_MolBench_A_Benchmark_of_AI_Models_for_Molecular_Property_Prediction.md) - [A localizing nanocarrier formulation enables multi-target immune responses to multivalent replicating RNA with limited systemic inflammation](2025-12-11_142749_pubmed_37403357.md) #### Other - [Your Brain In AI](2025-12-23_170453_yourbraininaicom_yourbraininai.md) - [Welcome to our world - Email](2025-12-15_220254_mailgooglecom_0.md) ### November 2025 - [Gauntlgrym Settlement in Forgotten Realms](2025-11-30_204607_worldanvilcom_gauntlgrym-article.md) - [Steven Ness | LinkedIn](2025-11-29_223136_linkedincom_steven-ness.md) - [doi.bio sness](2025-11-29_084438_snessdoibio_sness.md) - [A Quick Guide to Organizing Computational Biology Projects](2025-11-28_131626_pmcncbinlmnihgov_PMC2709440.md) - [Steven Randolph Ness - Google Scholar](2025-11-10_083859_scholargooglecom_citations.md) ### October 2025 - [Higher Levels](2025-10-19_092556_higherlevelscom_higher_levels.md) - [Overview - Svelte MCP Docs](2025-10-16_211814_sveltedev_overview.md) - [Local setup - Svelte MCP Docs](2025-10-16_064607_sveltedev_local-setup.md) - [Prisoners of the Drow - Out of the Abyss - D&D Beyond](2025-10-15_223728_dndbeyondcom_prisoners-of-the-drow.md) - [Explore Agentforce for Service: Key Benefits & Setup](2025-10-15_185748_trailheadsalesforcecom_get-started-with-agentforce-service-agent.md) - [Explore Key Features of Agentforce for Service](2025-10-15_190142_trailheadsalesforcecom_learn-the-building-blocks-of-agentforce-for-service.md) ### August 2025 #### Structural Biology - [Structure of the mechanically activated ion channel Piezo1](2025-08-29_144124_nature_nature25453.md) - [Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure](2025-08-29_144100_nature_nature22036.md) - [Structural insights into µ-opioid receptor activation](2025-08-29_144015_nature_nature14886.md) - [Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL](2025-08-29_143943_nature_nature21400.md) - [Structure of a human synaptic GABAA receptor](2025-08-29_143926_nature_s41586-018-0255-3.md) - [Histone modifications regulate pioneer transcription factor cooperativity](2025-08-29_143031_nature_s41586-023-06112-6.md) - [Structures illustrate step-by-step mitochondrial transcription initiation](2025-08-29_143012_nature_s41586-023-06643-y.md) - [Structural insights into intron catalysis and dynamics during splicing](2025-08-29_142948_nature_s41586-023-06746-6.md) - [Membraneless channels sieve cations in ammonia-oxidizing marine archaea](2025-08-29_142927_nature_s41586-024-07462-5.md) - [Oligomerization-mediated autoinhibition and cofactor binding of a plant NLR](2025-08-29_142900_nature_s41586-024-07668-7.md) - [Multiple mechanisms for licensing human replication origins](2025-08-29_142834_nature_s41586-024-08237-8.md) - [A closer look at how cells sense dietary nutrients](2025-08-28_022829_nature_d41586-025-02694-5.md) - [MassiveFold: unveiling AlphaFold's hidden potential with optimized and parallelized massive sampling](2025-08-28_022313_nature_s43588-024-00714-4.md) - [Structural analyses define the molecular basis of clusterin chaperone function](2025-08-21_022855_nature_s41594-025-01631-4.md) - [Lipid-mediated gating of a miniature mechanosensitive MscS channel from Trypanosoma cruzi](2025-08-21_022601_nature_s41467-025-62757-z.md) - [Structure of the human DICER–pre-miRNA complex in a dicing state](2025-08-21_152611_nature_s41586-023-05723-3.md) - [Placement of protein and RNA structures into a 5 Å-resolution map of the 50S ribosomal subunit](2025-08-21_022502_nature_23641.md) - [Structural Insights into the Protein Mannosyltransferase from Mycobacterium tuberculosis](2025-08-20_094426_nature_s42003-025-08593-9.md) #### Immunology & Therapeutics - [Fifty years of monoclonals: the past, present and future of antibody therapeutics](2025-08-20_094525_nature_s41577-025-01207-9.md) - [A multivalent mRNA vaccine elicits robust immune responses and confers protection in a murine model of monkeypox virus infection](2025-08-21_022530_nature_s41467-025-61699-w.md) - [Development of conformation-selective antibodies targeting human SLC15A4](2025-08-20_094138_nature_s41467-025-62759-x.md) - [Synthesis of Acinetobacter baumannii Lipid A(s) and derivatives and their structure-immunostimulatory activity relationships](2025-08-20_094553_nature_s42004-025-01628-6.md) - [Design of Ig-like binders targeting α-synuclein fibril for mitigating its pathological activities](2025-08-20_095455_nature_s41467-025-62755-1.md) - [PANCS-Binders: a rapid, high-throughput binder discovery platform](2025-08-20_094615_nature_s41592-025-02740-0.md) #### Genomics & Molecular Biology - [Joint, multifaceted genomic analysis enables diagnosis of diverse, ultra-rare monogenic presentations](2025-08-20_094537_nature_s41467-025-61712-2.md) - [Ribosome biogenesis in plants requires the nuclear envelope and mitochondria localized OPENER complex](2025-08-20_094445_nature_s41467-025-62652-7.md) - [Crosstalk between inovirus core gene and accessory toxin-antitoxin system mediates polylysogeny](2025-08-20_094507_nature_s41467-025-62378-6.md) #### Computational Biology & Tools - [The Simularium Viewer: an interactive online tool for sharing spatiotemporal biological models](2025-08-23_151743_nature_s41592-022-01442-1.md) - [Simularium](2025-08-23_145130_simulariumallencellorg_simularium.md) - [AI-enabled scientific revolution in the age of generative AI: second NSF workshop report](2025-08-20_095052_nature_s44387-025-00018-6.md) #### Development - [Verse Language Reference - Epic Developer Community](2025-08-24_081718_devepicgamescom_verse-language-reference.md) - [Open for (Cell) Science Tutorials: 3D Cell Visualization Tools - YouTube](2025-08-24_134530_youtube_VC8Qhvrq0Sk.md) ## 2026-01-11 - s41401-025-01688-3 **URL:** https://www.nature.com/articles/s41401-025-01688-3 **Content:** [[2026-01-11_200008_nature_s41401-025-01688-3]] --- ## 2026-01-11 - s41401-025-01659-8 **URL:** https://www.nature.com/articles/s41401-025-01659-8 **Content:** [[2026-01-11_200037_nature_s41401-025-01659-8]] --- ## 2026-01-11 - s42256-025-01095-7 **URL:** https://www.nature.com/articles/s42256-025-01095-7 **Content:** [[2026-01-11_200054_nature_s42256-025-01095-7]] --- ## 2026-01-11 - s41573-025-01220-6 **URL:** https://www.nature.com/articles/s41573-025-01220-6 **Content:** [[2026-01-11_200133_nature_s41573-025-01220-6]] --- ## 2026-01-11 - s41594-025-01676-5 **URL:** https://www.nature.com/articles/s41594-025-01676-5 **Content:** [[2026-01-11_200325_nature_s41594-025-01676-5]] --- ## 2026-01-11 - s41594-025-01669-4 **URL:** https://www.nature.com/articles/s41594-025-01669-4 **Content:** [[2026-01-11_200506_nature_s41594-025-01669-4]] --- ## 2026-01-11 - s41594-025-01568-8 **URL:** https://www.nature.com/articles/s41594-025-01568-8 **Content:** [[2026-01-11_200723_nature_s41594-025-01568-8]] --- ## 2026-01-11 - s41594-025-01594-6 **URL:** https://www.nature.com/articles/s41594-025-01594-6 **Content:** [[2026-01-11_201101_nature_s41594-025-01594-6]] --- ## 2026-01-11 - s41594-025-01712-4 **URL:** https://www.nature.com/articles/s41594-025-01712-4 **Content:** [[2026-01-11_201353_nature_s41594-025-01712-4]] --- ## 2026-01-11 - s41594-025-01566-w **URL:** https://www.nature.com/articles/s41594-025-01566-w **Content:** [[2026-01-11_215804_nature_s41594-025-01566-w]] --- ## 2026-01-11 - s41594-025-01489-6 **URL:** https://www.nature.com/articles/s41594-025-01489-6 **Content:** [[2026-01-11_221704_nature_s41594-025-01489-6]] --- ## 2026-01-11 - s41594-025-01650-1 **URL:** https://www.nature.com/articles/s41594-025-01650-1 **Content:** [[2026-01-11_222046_nature_s41594-025-01650-1]] --- ## 2026-01-11 - s41594-025-01593-7 **URL:** https://www.nature.com/articles/s41594-025-01593-7 **Content:** [[2026-01-11_222441_nature_s41594-025-01593-7]] --- ## 2026-01-11 - s41594-025-01666-7 **URL:** https://www.nature.com/articles/s41594-025-01666-7 **Content:** [[2026-01-11_230722_nature_s41594-025-01666-7]] --- ## 2026-01-11 - s41594-024-01455-8 **URL:** https://www.nature.com/articles/s41594-024-01455-8 **Content:** [[2026-01-11_231507_nature_s41594-024-01455-8]] --- ## 2026-01-11 - s41594-024-01454-9 **URL:** https://www.nature.com/articles/s41594-024-01454-9 **Content:** [[2026-01-11_232245_nature_s41594-024-01454-9]] --- ## 2026-01-11 - 41594_2025_1566_MOESM2_ESM.pdf **URL:** https://static-content.springer.com/esm/art%3A10.1038%2Fs41594-025-01566-w/MediaObjects/41594_2025_1566_MOESM2_ESM.pdf **Content:** [[2026-01-11_232723_staticcontentspringercom_41594_2025_1566_MOESM2_ESM.pdf]] --- ## 2026-01-13 - full **URL:** https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2020.00232/full **Content:** [[2026-01-13_061507_frontiersinorg_full]] --- ## 2026-01-16 - unknown **URL:** https://nanome.ai/blog/setting-up-boltz-2-configuration-files-and-analysis-with-nanome-ai/ **Content:** [[2026-01-16_063058_nanomeai_setting-up-boltz-2-configuration-files-and-analysis-with-nanome-ai]] --- ## 2026-01-16 - tools **URL:** https://mara.nanome.ai/tools **Content:** [[2026-01-16_063415_marananomeai_tools]] --- ## 2026-01-20 - s41594-025-01725-z **URL:** https://www.nature.com/articles/s41594-025-01725-z **Content:** [[2026-01-20_155501_nature_s41594-025-01725-z]] --- ## 2026-01-21 - s41594-025-01729-9 **URL:** https://www.nature.com/articles/s41594-025-01729-9 **Content:** [[2026-01-21_160817_nature_s41594-025-01729-9]] --- ## 2026-01-21 - pro.4443 **URL:** https://onlinelibrary.wiley.com/doi/abs/10.1002/pro.4443 **Content:** [[2026-01-21_161017_onlinelibrarywileycom_pro.4443]] --- ## 2026-01-21 - downloadSupplement?doi=10.1002%2Fpro.4443&file=pro4443-sup-0001-SupInfo.pdf#page=1.00&gsr=0 **URL:** https://onlinelibrary.wiley.com/action/downloadSupplement?doi=10.1002%2Fpro.4443&file=pro4443-sup-0001-SupInfo.pdf#page=1.00&gsr=0 **Content:** [[2026-01-21_161032_onlinelibrarywileycom_downloadSupplement]] --- ## 2026-01-21 - pro.4443 **URL:** https://onlinelibrary.wiley.com/doi/abs/10.1002/pro.4443 **Content:** [[2026-01-21_161336_onlinelibrarywileycom_pro.4443]] --- ## 2026-01-22 - unknown **URL:** https://openmolecules.org/datawarrior/ **Content:** [[2026-01-22_060616_openmoleculesorg_datawarrior]] --- ## 2026-01-29 - unknown **URL:** https://www.pdr.net/ **Content:** [[2026-01-29_160250_pdrnet_pdrnet_fully_searchable_drug_i]] --- ## 2026-01-30 - dna-origami-needles-virus-inspired-nanostructures-for-drug-delivery **URL:** https://plentyofroom.beehiiv.com/p/dna-origami-needles-virus-inspired-nanostructures-for-drug-delivery **Content:** [[2026-01-30_092758_plentyofroombeehiivcom_dna-origami-needles-virus-inspired-nanostructures-for-drug-delivery]] --- ## 2026-01-31 - 2506.15792 **URL:** https://arxiv.org/abs/2506.15792 **Content:** [[2026-01-31_183118_arxiv_2506.15792]] --- ## 2026-01-31 - tox21_leaderboard **URL:** https://huggingface.co/spaces/ml-jku/tox21_leaderboard **Content:** [[2026-01-31_183130_huggingfaceco_tox21_leaderboard]] --- ## 2026-01-31 - unknown **URL:** https://blog.escalante.bio/180-lines-of-code-to-win-the-in-silico-portion-of-the-adaptyv-nipah-binding-competition/ **Content:** [[2026-01-31_183157_blogescalantebio_180-lines-of-code-to-win-the-in-silico-portion-of-the-adaptyv-nipah-binding-competition]] --- ## 2026-01-31 - unknown **URL:** https://blog.escalante.bio/180-lines-of-code-to-win-the-in-silico-portion-of-the-adaptyv-nipah-binding-competition/ **Content:** [[2026-01-31_183238_blogescalantebio_180-lines-of-code-to-win-the-in-silico-portion-of-the-adaptyv-nipah-binding-competition]] --- ## 2026-02-01 - The_Global_Brain_Institute_Vision **URL:** https://www.academia.edu/104885916/The_Global_Brain_Institute_Vision **Content:** [[2026-02-01_135457_academiaedu_The_Global_Brain_Institute_Vision]] --- ## 2026-02-02 - BacktrackChpt.pdf **URL:** https://webhome.cs.uvic.ca/~ruskey/classes/Knuth4A/BacktrackChpt.pdf **Content:** [[2026-02-02_135639_webhomecsuvicca_BacktrackChpt.pdf]] --- ## 2026-02-03 - acs.jcim.5c02777 **URL:** https://pubs.acs.org/doi/10.1021/acs.jcim.5c02777 **Content:** [[2026-02-03_074239_pubsacsorg_acs.jcim.5c02777]] --- ## 2026-02-04 - Scarlett-Kelly **URL:** https://www.researchgate.net/profile/Scarlett-Kelly **Content:** [[2026-02-04_145131_researchgatenet_Scarlett-Kelly]] --- ## 2026-02-18 - prot.70061 **URL:** https://onlinelibrary.wiley.com/doi/10.1002/prot.70061 **Content:** [[2026-02-18_214159_onlinelibrarywileycom_prot.70061]] --- ## 2026-02-26 - S0048969724062922 **URL:** https://www.sciencedirect.com/science/article/pii/S0048969724062922 **Content:** [[2026-02-26_102207_sciencedirectcom_S0048969724062922]] --- ## 2026-02-26 - S2211926415300394 **URL:** https://www.sciencedirect.com/science/article/abs/pii/S2211926415300394 **Content:** [[2026-02-26_102237_sciencedirectcom_S2211926415300394]] --- ## 2026-02-26 - S2211926418302923 **URL:** https://www.sciencedirect.com/science/article/abs/pii/S2211926418302923 **Content:** [[2026-02-26_102251_sciencedirectcom_S2211926418302923]] --- ## 2026-02-26 - S2211926419312111 **URL:** https://www.sciencedirect.com/science/article/abs/pii/S2211926419312111 **Content:** [[2026-02-26_102301_sciencedirectcom_S2211926419312111]] --- ## 2026-02-26 - 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978-1-4615-5611-4_30 **URL:** https://link.springer.com/chapter/10.1007/978-1-4615-5611-4_30 **Content:** [[2026-05-15_182728_linkspringercom_978-1-4615-5611-4_30]] --- ## 2026-05-15 - %28SICI%291097-0134%281997%291+%3C198::AID-PROT26%3E3.0.CO%3B2-I **URL:** https://onlinelibrary.wiley.com/doi/10.1002/%28SICI%291097-0134%281997%291+%3C198::AID-PROT26%3E3.0.CO%3B2-I **Content:** [[2026-05-15_182846_onlinelibrarywileycom__28SICI_291097-0134_281997_291__3C198__AID-PROT26_3E3.0.CO_3B2-I]] --- ## 2026-05-16 - jmbi.1996.0477 **URL:** https://sci-hub.box/10.1006/jmbi.1996.0477 **Content:** [[2026-05-16_213711_scihubbox_jmbi.1996.0477]] --- ## 2026-05-16 - 2405.11769 **URL:** https://arxiv.org/abs/2405.11769 **Content:** [[2026-05-16_213827_arxiv_2405.11769]] --- ## 2026-05-16 - Molecular_Docking_with_a_View_The_Integration_of_a_Monte_Carlo_Docking_Program_into_a_Virtual_Reality_Environment **URL:** https://www.academia.edu/47297324/Molecular_Docking_with_a_View_The_Integration_of_a_Monte_Carlo_Docking_Program_into_a_Virtual_Reality_Environment **Content:** [[2026-05-16_213941_academiaedu_Molecular_Docking_with_a_View_The_Integration_of_a_Monte_Carlo_Docking_Program_into_a_Virtual_Reality_Environment]] --- ## 2026-05-16 - v1 **URL:** https://www.authorea.com/doi/full/10.22541/au.174562565.51283311/v1 **Content:** [[2026-05-16_214205_authoreacom_v1]] --- ## 2026-05-16 - 2408.16975 **URL:** https://arxiv.org/abs/2408.16975 **Content:** [[2026-05-16_214218_arxiv_2408.16975]] --- ## 2026-05-16 - 2507.09251 **URL:** https://arxiv.org/abs/2507.09251 **Content:** [[2026-05-16_214226_arxiv_2507.09251]] --- ## 2026-05-16 - 2507.02025 **URL:** https://arxiv.org/abs/2507.02025 **Content:** [[2026-05-16_214232_arxiv_2507.02025]] --- ## 2026-05-16 - 2402.18396 **URL:** https://arxiv.org/abs/2402.18396 **Content:** [[2026-05-16_214236_arxiv_2402.18396]] --- ## 2026-05-16 - 2310.06763 **URL:** https://arxiv.org/abs/2310.06763 **Content:** [[2026-05-16_214242_arxiv_2310.06763]] --- ## 2026-05-16 - 2210.01776 **URL:** https://arxiv.org/abs/2210.01776 **Content:** [[2026-05-16_214305_arxiv_2210.01776]] --- ## 2026-05-16 - 2202.05146 **URL:** https://arxiv.org/abs/2202.05146 **Content:** [[2026-05-16_214310_arxiv_2202.05146]] --- ## 2026-05-17 - 322797120_Structure-based_drug_design_synthesis_and_biological_assays_of_P_falciparum_Atg3-Atg8_protein-protein_interaction_inhibitors **URL:** https://www.researchgate.net/publication/322797120_Structure-based_drug_design_synthesis_and_biological_assays_of_P_falciparum_Atg3-Atg8_protein-protein_interaction_inhibitors **Content:** [[2026-05-17_195043_researchgatenet_322797120_Structure-based_drug_design_synthesis_and_biological_assays_of_P_falciparum_Atg3-Atg8_protein-protein_interaction_inhibitors]] --- ## 2026-05-21 - carbon **URL:** https://huggingface.co/collections/HuggingFaceBio/carbon **Content:** [[2026-05-21_200716_huggingfaceco_carbon]] --- ## 2026-05-21 - dna-benchmarks **URL:** https://huggingface.co/collections/HuggingFaceBio/dna-benchmarks **Content:** [[2026-05-21_200752_huggingfaceco_dna-benchmarks]] --- ## 2026-05-21 - carbon **URL:** https://github.com/sness23/carbon **Content:** [[2026-05-21_200742_github_sness23_carbon]] --- ## 2026-05-21 - tech-report.pdf **URL:** https://github.com/huggingface/carbon/blob/main/tech-report.pdf **Content:** [[2026-05-21_200801_github_huggingface_carbon]] --- ## 2026-05-21 - carbon-demo **URL:** https://huggingface.co/spaces/HuggingFaceBio/carbon-demo **Content:** [[2026-05-21_200817_huggingfaceco_carbon-demo]] --- ## 2026-05-22 - 2605.02937 **URL:** https://arxiv.org/abs/2605.02937 **Content:** [[2026-05-22_075252_arxiv_2605.02937]] --- ## 2026-05-22 - unknown **URL:** https://smiles724.github.io/r1/ **Content:** [[2026-05-22_075306_smiles724githubio_r1]] --- ## 2026-06-08 - unknown **URL:** https://www.linkedin.com/pulse/what-multivalent-gpcr-conjugates-quietly-tell-us-our-blind-damko-cpaie/ **Content:** [[2026-06-08_163204_linkedincom_what-multivalent-gpcr-conjugates-quietly-tell-us-our-blind-damko-cpaie]] --- ## 2026-06-13 - acsmedchemlett.6c00003 **URL:** https://pubs.acs.org/doi/10.1021/acsmedchemlett.6c00003 **Content:** [[2026-06-13_163230_pubsacsorg_acsmedchemlett.6c00003]] --- ## 2026-06-13 - acschembio.3c00487 **URL:** https://pubs.acs.org/doi/10.1021/acschembio.3c00487 **Content:** [[2026-06-13_163308_pubsacsorg_acschembio.3c00487]] --- ## 2026-06-13 - nsmb.2874 **URL:** https://www.nature.com/articles/nsmb.2874 **Content:** [[2026-06-13_163330_nature_nsmb.2874]] --- ## 2026-06-13 - s41467-024-50642-0 **URL:** https://www.nature.com/articles/s41467-024-50642-0 **Content:** [[2026-06-13_163349_nature_s41467-024-50642-0]] --- ## 2026-06-13 - 59994 **URL:** https://elifesciences.org/articles/59994 **Content:** [[2026-06-13_163407_elifesciencesorg_59994]] --- ## 2026-06-13 - acs.jmedchem.4c02010 **URL:** https://pubs.acs.org/doi/10.1021/acs.jmedchem.4c02010 **Content:** [[2026-06-13_163426_pubsacsorg_acs.jmedchem.4c02010]] --- ## 2026-06-13 - acsmedchemlett.6c00003 **URL:** https://pubs.acs.org/doi/10.1021/acsmedchemlett.6c00003 **Content:** [[2026-06-13_163556_pubsacsorg_acsmedchemlett.6c00003]] --- ## 2026-06-13 - s41467-025-67403-2 **URL:** https://www.nature.com/articles/s41467-025-67403-2 **Content:** [[2026-06-13_163616_nature_s41467-025-67403-2]] --- ## 2026-06-17 - unknown **URL:** https://jax-ml.github.io/scaling-book/ **Content:** [[2026-06-17_083654_jaxmlgithubio_scaling-book]] --- ## 2026-06-18 - unknown **URL:** https://jax-ml.github.io/scaling-book/ **Content:** [[2026-06-18_181145_jaxmlgithubio_scaling-book]] --- ## 2026-06-24 - unknown **URL:** https://alphafoldserver.com/ **Content:** [[2026-06-24_161028_alphafoldservercom_alphafold_server]] --- ## 2026-07-06 - unknown **URL:** https://huggingbay.xyz/ **Content:** [[2026-07-06_125019_huggingbayxyz_hugging_bay]] --- ## 2026-07-07 - 2025.12.04.692352v2.full.pdf **URL:** https://www.biorxiv.org/content/10.64898/2025.12.04.692352v2.full.pdf **Content:** [[2026-07-07_141659_biorxiv_2025.12.04.692352v2.full.pdf]] --- ## 2026-07-10 - full **URL:** https://deepblue.lib.umich.edu/items/74bbfd9a-e53b-4941-ad3b-06ae211172c5/full **Content:** [[2026-07-10_102523_deepbluelibumichedu_full]] --- ## 2026-07-11 - unknown **URL:** https://pmc.ncbi.nlm.nih.gov/articles/PMC8708032/ **Content:** [[2026-07-11_113417_pmcncbinlmnihgov_PMC8708032]] --- ## 2026-07-11 - 07391102.2025.2483952 **URL:** https://www.tandfonline.com/doi/full/10.1080/07391102.2025.2483952 **Content:** [[2026-07-11_113425_tandfonlinecom_07391102.2025.2483952]] --- ## 2026-07-15 - SignalP 6.0 **URL:** https://services.healthtech.dtu.dk/services/SignalP-6.0/ **Content:** [[2026-07-15_182916_serviceshealthtechdtudk_SignalP-6.0]] **Research notes:** [[docs/signalp6/README|SignalP 6.0 research notes]] — signal-peptide prediction (all 5 types) via a ProtBERT + CRF model. Overview · Architecture · Usage · Benchmarks. --- ## 2026-07-19 - ?id=858332090 **URL:** https://steamcommunity.com/sharedfiles/filedetails/?id=858332090 **Content:** [[2026-07-19_191613_steamcommunitycom_filedetails]] --- Save Cancel Preview · live